HsaALTA1053713-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35110294-35111907:+
Coord C1 exon
chr1:35110294-35110447
Coord A exon
chr1:35111825-35111828
Coord C2 exon
chr1:35111829-35111907
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CAGAGCTTCTTTCTCCAAAGAAA
3' ss Score
3.95
Exon sequences
Seq C1 exon
AAACCTGCCAAACCACTTATATCTGTTCCTTGCAAACCATTGAAGCCCTCAGATGAAATGATTGAGACTACGAGTGATTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCATACAGTAAAGCTAAGATGGAATCTTCTTCAG
Seq A exon
AAAG
Seq C2 exon
ATACGACTCCAGTTATAAGCAATATAGTGTCATTGGCAGACACCGATGTTGCCTTGCCCATCATGAACACTGATGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056-51-51,51-50,51-49-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCTCTGCATACAGTAAAGCT
R:
ACATCGGTGTCTGCCAATGAC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains