HsaALTA0007700-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000116560 | SFPQ
Description
splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
Coordinates
chr1:35176371-35177661:-
Coord C1 exon
chr1:35177319-35177661
Coord A exon
NA
Coord C2 exon
chr1:35176371-35176471
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TCATACCCTTTAATTAGCAGGAT
3' ss Score
5.14
Exon sequences
Seq C1 exon
TTTTTACTTAAGAAAATGTAGGAGAAGGTCAGGCATGGTGGCTTTACACCTATATTCCTAGCACTTTGGGAGGCAGAAGTGGGAGGATTGCTTGAGCCCAGCCTGGGCAAAATAGTGAGACCATGTCTCTACAGAAAAAAATATAGCCAGGTGTGGTGGTGTGTGCCTGTGGTCCCAGCTCCCTTGGAGGCTGAGGTGGGAGGGATCGCTTGATCCTGGGAGGTTGAGGCTGCAGTGAGCAAGTTAACATTTTTTGTTACAGGTGGATAGATACTTCTCAAGACATCACACAGCGTGAGTCAATCAAGGAGGGAAGCCACAAGCAGACTGACAACGTTTCTAG
Seq A exon
NA
Seq C2 exon
GATCAGGTGAGCTGTGTCCAGAAAACCAACGAGAAGGAGTGGAAGGAGGAATGAACGTTTCATTCTCGTTAATAAAGGCATTATCCTAATTATCCTTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116560-32-42,32-41-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGAGTCAATCAAGGAGGG
R:
CCTCCTTCCACTCCTTCTCGT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development