HsaEX0072878 @ hg19
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:26253]
Coordinates
chr1:35562918-35576048:+
Coord C1 exon
chr1:35562918-35563167
Coord A exon
chr1:35569896-35570070
Coord C2 exon
chr1:35575895-35576048
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTTATTTATTCTTAGAGA
3' ss Score
7.14
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTCACAGTTGACTGCAGGCATTCAGCTTTCTCTGGCATCATCTGGCGTGAATAAAATGCTTCCTTCAGTTTCAACCACAGCTATTCAGGTTTCCTGTGCTGGTTGTAAAAAAATTCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGATCTGCTCAACTTTTCTGCTCCATACCATGCATCACTGAATACATTTCATCTGCCAGTTCACCAGTTCCTTCTAAGAGAACTTGTTCAAACTGCTCAAA
Seq A exon
AGACATTTTAAATCCAAAGGATGTGATTAGTGTCCAGCTGGAAGACACTACCTCTTGCAAAACTTTTTGCAGCCTATCTTGTCTTTCATCATATGAAGAAAAAAGAAAACCATTTGTTACCATATGTACTAATAGCATTTTGACCAAGTGCAGCATGTGCCAGAAGACTGCTATT
Seq C2 exon
AAACCTGCCAAACCACTTATATCTGTTCCTTGCAAACCATTGAAGCCCTCAGATGAAATGATTGAGACTACGAGTGATTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCATACAGTAAAGCTAAGATGGAATCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056_MULTIEX1-2/5=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF110233=DUF2614=PD(96.9=75.0),PF064679=zf-FCS=WD(100=48.8)
A:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(38.5=25.4)
C2:
PF064679=zf-FCS=WD(100=61.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTTCCTGTGCTGGTTGT
R:
TGTCTTCCCCAAATCACTCGT
Band lengths:
254-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)