DreEX6073954 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40489870-40494637:+
Coord C1 exon
chr19:40489870-40490104
Coord A exon
chr19:40493596-40493725
Coord C2 exon
chr19:40494422-40494637
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTTTTTTCCCACAGAGA
3' ss Score
11.77
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTCAAGTAAGTGTCTCAGCGAAGCCAGCACCAGTCCCTACACTGTCCCTCCGTCCTTTAGCTCCAGCCAATCCGGTCGGTGTGGTTTGCACAGGGTGTAATAAAATCCTGCTGAAGGGACAGACGGCTTTCCAGCGCAAAGGCTGTCCTAAACTCTTCTGCTCACCTCAATGTCTCTGTAGCAACTCCAATGTGGTGGTCAAGATGCCTCCCAAGAAATGTCACTTCTGCCTCAA
Seq A exon
AGATATTACTGATTCTAAGGATGTGATCAGTGCACCGGTGGATATGGCAGGGAATCTGAAGGAGTTTTGCAGTCAGAAATGCATCAGTTTATTAAACTTCAAGTGCAGTGTGTGTCAGAAGGCGGGAACA
Seq C2 exon
ACTTTTACTCACAAAGTGAACTTGATGGACTCCGTCCATATTCTGTGCAGCGACGACTGCTTCAACCAGTTTCGCACCTCCAATAAGCTGAACGGGAACAGCTGTATGAACTGTGGGGGAATCTGCTACGGCACAGACGCTCCATGTCAATCTCTGCAGATAGAGGGCATCGTTATGAAGTTCTGCAAGCCGAGCTGCCTCACAGCCTTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=50.6),PF064679=zf-FCS=PU(23.8=12.7)
A:
PF064679=zf-FCS=PD(73.8=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTAGCTCCAGCCAATCCGG
R:
TGCGAAACTGGTTGAAGCAGT
Band lengths:
257-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]