BtaEX6018992 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110973607-110978687:-
Coord C1 exon
chr3:110978432-110978687
Coord A exon
chr3:110973932-110974106
Coord C2 exon
chr3:110973607-110973819
Length
175 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGTTGTCATTTTTAGAGA
3' ss Score
10.21
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCACTGGCGTCATCTGGCATGAATAAAATGCTTCCTTCAGTTCCAGCCACAGCTGTTCGAGTTTCCTGTTCTGGTTGTAAAAAAATCCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGGTCTACGCAGCTGTTCTGCTCTACATTGTGCCTCACTGGATATACAGTTCCACCTGCCCGCCCACCGCCTCCTCCCACTAAGAAAACTTGCTCAAGTTGCTCAAA
Seq A exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAATACCACCACTAGTAAAGATTTTTGTAGTCAGTCGTGTTTGTCAACATATGAACTGAAAAGAAAACCTGTTGTTACCATAAATACAAATAGCATTTCAACTAAATGCAGCATGTGTCAGAAGAATGCTGTT
Seq C2 exon
ATTCGACATGAAGTTAATTACCAGAATGTGGTACATAAACTTTGCAGTGATGCCTGCTTCTCTAAATTTCGCTCTGCTAACAATCTCACCATGAACTGTTGTGAAAACTGTGGGGGTTACTGCTACAGTGGCTCTGGACAATGCCACATGCTTCAGATAGAGGGACAGTCTAAGAAGTTTTGTAGTTCAACATGTGTCACAGCATATAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
A:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGAAAGGGTCTACGCA
R:
TGTAGCAGTAACCCCCACAGT
Band lengths:
244-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]