RnoEX0102041 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144924321-144932199:-
Coord C1 exon
chr5:144931944-144932199
Coord A exon
chr5:144924644-144924818
Coord C2 exon
chr5:144924321-144924533
Length
175 bp
Sequences
Splice sites
3' ss Seq
TATCTCTGTTGTCATTTTAGAGA
3' ss Score
8.45
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCTCTGGCATCACCTGGCATGAATAAAATGCTTCCTGCAGTTCCAGCCACAGCTATTCGAGTTTCCTGCTCTGGTTGTAAAAAAATCCTCCAGAAGGGACAGACGGCTTATCAGAGGAAAGGGTCAACTCAGCTTTTCTGCTCCACCCTGTGCCTCACGGGATACACAGTGCCACCTGCCCGCCCACCGCCGCCTCTCACCAAGAAGACTTGTTCCAGTTGCTCAAA
Seq A exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAATTTGAAAATAGCACCACCAGTAAGGATTTTTGCAGTCAGTCATGCTTGTCAACATATGAACTGAAAAAAAAGCCCATTGTTACCATAAATACAAATAGCATTTCAACCAAGTGCAGCATGTGTCAGAAGAACGCTGTT
Seq C2 exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTCTCTAAGTTCCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGCTATAGTGGCTCTGGACAGTGCCATGTGCTTCAGATTGAGGGACAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'25-19,'25-17,26-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
A:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGGGACAGACGGCTTA
R:
CCCCCACAGTTCTCACAACAG
Band lengths:
254-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]