HsaEX6029945 @ hg19
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35835973-35847359:+
Coord C1 exon
chr1:35835973-35836228
Coord A exon
chr1:35846860-35847034
Coord C2 exon
chr1:35847147-35847359
Length
175 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTCTTATTTTTAGAGA
3' ss Score
9.11
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
CTCCACAGTTGACTACTGGCTTTCAGCCCTCACTGGCGTCATCTGGCATGAATAAAATGCTTCCTTCAGTTCCAGCCACAGCTGTTCGAGTTTCCTGTTCTGGTTGTAAAAAAATCCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGGTCTACTCAGCTATTCTGCTCCACACTGTGCCTCACTGGATATACAGTTCCACCTGCCCGCCCACCGCCTCCTCTCACCAAGAAAACTTGTTCAAGTTGCTCAAA
Seq A exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAACACCACCACTAGTAAAGATTTTTGCAGTCAGTCATGTTTGTCAACATATGAACTGAAAAAAAAACCTATTGTTACCATAAATACAAATAGTATTTCAACCAAATGCAGCATGTGTCAGAAGAATGCTGTT
Seq C2 exon
ATTCGACATGAAGTTAATTACCAGAATGTGGTCCATAAACTTTGCAGTGATGCCTGCTTCTCTAAGTTTCGTTCTGCTAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGGGTTACTGTTACAGTGGGTCGGGACAATGCCACATGCTTCAGATAGAGGGACAGTCTAAGAAGTTTTGTAGTTCATCGTGTATCACGGCATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'19-22,'19-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
A:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGGGGCAAACTGCTTA
R:
CCCCCACAGTTCTCACAACAG
Band lengths:
254-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)