HsaEX0072877 @ hg38
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35097317-35104469:+
Coord C1 exon
chr1:35097317-35097566
Coord A exon
chr1:35099351-35099447
Coord C2 exon
chr1:35104295-35104469
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTCTCTCCCTGCAGAGT
3' ss Score
13.55
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
CTTCACAGTTGACTGCAGGCATTCAGCTTTCTCTGGCATCATCTGGCGTGAATAAAATGCTTCCTTCAGTTTCAACCACAGCTATTCAGGTTTCCTGTGCTGGTTGTAAAAAAATTCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGATCTGCTCAACTTTTCTGCTCCATACCATGCATCACTGAATACATTTCATCTGCCAGTTCACCAGTTCCTTCTAAGAGAACTTGTTCAAACTGCTCAAA
Seq A exon
AGTCATAAAACTGGAAGGGACCTTAGAGACTCACTACACATCTTCAGCAGATGTCCCAGACAGATTGAAAAAGGCTGAAGCAGGAAAGATTTAGTGT
Seq C2 exon
AGACATTTTAAATCCAAAGGATGTGATTAGTGTCCAGCTGGAAGACACTACCTCTTGCAAAACTTTTTGCAGCCTATCTTGTCTTTCATCATATGAAGAAAAAAGAAAACCATTTGTTACCATATGTACTAATAGCATTTTGACCAAGTGCAGCATGTGCCAGAAGACTGCTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056_MULTIEX2-1/9=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(28.9=15.5)
A:
NO
C2:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(38.5=25.4)
Main Inclusion Isoform:
ENST00000373330fB8032
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCAAACTGCTTATCAGAGG
R:
AGGTAGTGTCTTCCAGCTGGA
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development