MmuEX0053912 @ mm9
Exon Skipping
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:126731452-126736275:-
Coord C1 exon
chr4:126736037-126736275
Coord A exon
chr4:126734645-126734837
Coord C2 exon
chr4:126731452-126731626
Length
193 bp
Sequences
Splice sites
3' ss Seq
TCTACTTTCTCTTTCTGCAGAGT
3' ss Score
11.02
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
CTCCACAGTTGACGGTCTTCTCTCCTCTCACCTGACTTGAATAAAATGCTTCCTGCAGTTCCAGGCACAGCTGTTCGACTCTCCTGTGCCAAATGTAAAAGAGTTTTTCAGGAGGGACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCAAGACTATGCATTGATGGGTACCCGTCACCTGCTGTGTCTCCAGCTCCTCTCAAAAGGATGTGCTTAAATTGCTCAAG
Seq A exon
AGTCCTAAACCTGGAAGGGACATTAGAGATCACCCAGTGCAGACCTTTTCTTTTGCTTTTGAAAAAACTGAGGCCCTGAGGAATTAAGGCACTGTGTTGCTATGGTTAGCATATACGCACTACATTTCTTCAGCCCCAGCTTTGCTACATGTCACAGGCGTTGAAAAGACTCATGCAAGAAAGAATTTGCTGT
Seq C2 exon
AGACATTTTAAGTCTAAAGGATATGAAGAGTGTCCAGTTGGAGGATAGTAGTTGTGACAAAAACTTTTGTAGCCAATCTTGTCTTACATCATATGAAGAAAAAAGAAAACCAGGTGTTACCATATATACTGATAGCAGTTTGCCCAAGTGCAGCATGTGTCAGAAGACATCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872_MULTIEX1-3/5=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=63.1),PF060616=Baculo_ME53=PU(80.3=93.8)
A:
PF060616=Baculo_ME53=PD(27.1=85.2)
C2:
PF064679=zf-FCS=PD(70.5=52.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGGGTCTGCTGAGCTTT
R:
TGCACTTGGGCAAACTGCTAT
Band lengths:
258-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types