MmuEX0053911 @ mm9
Exon Skipping
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:126731452-126738396:-
Coord C1 exon
chr4:126738240-126738396
Coord A exon
chr4:126736037-126736275
Coord C2 exon
chr4:126731452-126731626
Length
239 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCCTATTTCTCAAGCTC
3' ss Score
7.49
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGGGCGGAGCCGGCGGGGTTGTTTGCACGGCAAAATGCGAGTGGGCGCTTCCCGCCGCTGAGTTGGAGACAGATCAGCCATCCTCGTGGAGCCGCTCAGGCCCGCTTTTCCAGAGAGAGGCGGCATTTCTCCCGTCCTGAGGAGGGTGACGCGACAG
Seq A exon
CTCCACAGTTGACGGTCTTCTCTCCTCTCACCTGACTTGAATAAAATGCTTCCTGCAGTTCCAGGCACAGCTGTTCGACTCTCCTGTGCCAAATGTAAAAGAGTTTTTCAGGAGGGACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCAAGACTATGCATTGATGGGTACCCGTCACCTGCTGTGTCTCCAGCTCCTCTCAAAAGGATGTGCTTAAATTGCTCAAG
Seq C2 exon
AGACATTTTAAGTCTAAAGGATATGAAGAGTGTCCAGTTGGAGGATAGTAGTTGTGACAAAAACTTTTGTAGCCAATCTTGTCTTACATCATATGAAGAAAAAAGAAAACCAGGTGTTACCATATATACTGATAGCAGTTTGCCCAAGTGCAGCATGTGTCAGAAGACATCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872_MULTIEX1-2/5=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF064679=zf-FCS=WD(100=63.1),PF060616=Baculo_ME53=PU(80.3=93.8)
C2:
PF064679=zf-FCS=PD(70.5=52.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACGGCAAAATGCGAGT
R:
TCTGACACATGCTGCACTTGG
Band lengths:
299-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types