RnoEX0102002 @ rn6
Exon Skipping
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145114361-145123861:-
Coord C1 exon
chr5:145123625-145123861
Coord A exon
chr5:145118572-145118806
Coord C2 exon
chr5:145114361-145114535
Length
235 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTCCTGTTTCTCAAGCTC
3' ss Score
6.78
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GGAGCCGGCGTGGTTGTTTGCACTGCGAAACCCGAGTGGGCGCTTCCCGCCGCTGGGTTGGTGATAGATTATCCGTCCTCGTGGAGTCGCTCAGGGCCGCTTTTCCAGAGAGAGGTGGCGTTTTTCCGGTCCTGAGGAGGGTGACGCGACAGGTGGGAAGCCCACAGTGTCGAGAGAGTCGTGACCCCGGCTTCCAGGCTTCTTGGCGTCCTGGCCTCTGTACGGTGACTGAGCTTG
Seq A exon
CTCCACAGCCGACATCTCTGTTCTCACCTGACGTGAGTAAAATGCTTCCTGCAGTTCCAGGCACAGCTGCTCAGCTTTCCTGTTCCAGTTGTAGAAGAGTCTTTCAGGAGGGACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCGAGACTCTGCATCGATGGGTGCCCTTTACCTGCTATGTCCCCAGCTCCTCTCAAAAGAATGTGCTTAAACTGCTCAAG
Seq C2 exon
AGACATTTTAAATCTAAAGGATATGAAGAGCGTCCGATTGGAGGATAGCAGTTGTAACAAAAACTTTTGTAGCCAGTCTTGTCTTACATCATATGAAGAAAAACGAAAGCCATGTGTTACCGTATATACTGAGAGCACTTTGCCTAAGTGCAGCATGTGTCAGAGGACATCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855-'2-6,'2-2,7-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF064679=zf-FCS=WD(100=61.5),PF064679=zf-FCS=PU(27.3=18.5)
C2:
PF064679=zf-FCS=PD(70.5=52.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCCAGAGAGAGGTGGC
R:
CCTCTGACACATGCTGCACTT
Band lengths:
305-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]