BtaEX0041021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111184344-111205859:-
Coord C1 exon
chr3:111205683-111205859
Coord A exon
chr3:111191757-111192006
Coord C2 exon
chr3:111184344-111184497
Length
250 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTTTGTATTTATAGCTC
3' ss Score
8.54
5' ss Seq
TAAGTATAT
5' ss Score
-1.83
Exon sequences
Seq C1 exon
AAAGAAGTTGGGAAGCCTCCTTAAGCGGTTGTGGCGTCGATCTTTATTCATGTGCTTTACCAGAGGCGAGCGGAGAGTTTCACCAGTCAGAGGGAAGATGAAGTGTCCGGGAGAGCCGGGGTTCTAGGAACCCAGCCTTGCCTGTGGATGCCGCCCTGTGGGGGTCGAGAATTCAGG
Seq A exon
CTCCTCAGATCACTACAGGCATTCAGCTTTCTCTGGCATCATCTGGCATGAATAAGATGCTTCCTTCAATTTCAACCACAGCTGTTCAGGTTTCCTGTTCTGGTTGTAAAAAAGTTTTTCAAAAGGGACAAACTGCTTATCAGAGGAAAGGTTCTACTGAGCTTTTCTGCTCCACACCATGCATCACTGAATACATTTCATCTGGCAGTTCACCAGCTCTTCCGAAGAGAACTTGTTCAAACTGCTCTAA
Seq C2 exon
AAACCAGCCAAATCACTACCACCTGTTCTTTGCAAATCATTGAAGCCCACAGATGAAATGATTGAGACTACCAGTGACTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCTTACAGTAAAGCTAAGATGGAATCTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555_MULTIEX1-3/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(28.9=15.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGAAGCCTCCTTAAGCG
R:
AGCAGAGAAACAATTAATAGAGCAGA
Band lengths:
294-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development