DreEX6053320 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14756867-14762744:-
Coord C1 exon
chr17:14762669-14762744
Coord A exon
chr17:14760402-14760822
Coord C2 exon
chr17:14756867-14757029
Length
421 bp
Sequences
Splice sites
3' ss Seq
ATGAGTTTGTTTTCACGCAGCAT
3' ss Score
5.16
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GCCTCCTCTGCATCAGATGAACTGAGGATTAGCTCTGTTTATTCTGTCAGTGGGAACAGCAGTGATGCAGTTTCTG
Seq A exon
CATCCGTGGCACCTTCCCAGCAGTCTTCCTTCTCAGTAATCTCCCAGAGCGCTGCATCACTCAGAGGAACCACTATACTCCTGCCAGCCCAAGCCCAAACTCCACTTCAGCTCCAACTGCAGCATAAGGCCCAGATGCATTCTCAAATCCAGGCACAGGCTCGAATGCAGCCACCCATGATGGCCCAGGCCCAGCTGCAGGCTGTTCCTCCTCAGCCGCCCCAGATCCACGCTCCTCCACCCACAGTCAGGATCTGCTGCTCGGGCTGCTCGAAGGTCCTCCAGAAGGGGCAAACGGCGTTCCAGCGAAAAGGCTCCAACCAGCTGTTTTGCTCCACCGTGTGTCTAACGAGTTTCAGTTTACCCTCGGTTCAGTTTACACCCATCATCGCCCCCAAGAAAACCTGCCACCTCTGCCTTAA
Seq C2 exon
GGTCATTGTCAATCTAAAGGACTTGATTACCATCCCTGTGGGCTCCATGAACACACTAAAGGAATTCTGCAGCCAGGCTTGTCTAAGTATTTATAGAGACCGATATGAAGATGCACCTCCAGATCTGTTCACACACTGCAATGTCTGCAAGTTAGTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'7-15,'7-14,8-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.291 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=29.1),PF064679=zf-FCS=PU(28.9=9.2)
C2:
PF064679=zf-FCS=PD(68.9=56.4),PF064679=zf-FCS=PU(29.4=18.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTCTGCATCAGATGAAC
R:
TCTTTGACTAACTTGCAGACATTG
Band lengths:
238-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]