HsaEX0072917 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35370029-35381433:+
Coord C1 exon
chr1:35370029-35370113
Coord A exon
chr1:35370372-35370627
Coord C2 exon
chr1:35381259-35381433
Length
256 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTAAAGCTC
3' ss Score
10.15
5' ss Seq
AAAGTATAG
5' ss Score
-1.06
Exon sequences
Seq C1 exon
GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGCCCTCTTG
Seq A exon
CTCCACAGTTGACTACTGGCTTTCAGCCCTCACTGGCGTCATCTGGCATGAATAAAATGCTTCCTTCAGTTCCAGCCACAGCTGTTCGAGTTTCCTGTTCTGGTTGTAAAAAAATCCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGGTCTACTCAGCTATTCTGCTCCACACTGTGCCTCACTGGATATACAGTTCCACCTGCCCGCCCACCGCCTCCTCTCACCAAGAAAACTTGTTCAAGTTGCTCAAA
Seq C2 exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAACACCACCACTAGTAAAGATTTTTGCAGTCAGTCATGTTTGTCAACATATGAACTGAAAAAAAAACCTATTGTTACCATAAATACAAATAGTATTTCAACCAAATGCAGCATGTGTCAGAAGAATGCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463_MULTIEX2-11/11=10-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.181 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
C2:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTATAGTCATGGCCAACAGCA
R:
AACAGCATTCTTCTGACACATGC
Band lengths:
260-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development