BtaEX6018991 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110973932-110979009:-
Coord C1 exon
chr3:110978925-110979009
Coord A exon
chr3:110978432-110978687
Coord C2 exon
chr3:110973932-110974106
Length
256 bp
Sequences
Splice sites
3' ss Seq
TTTTCAATTTTTTTTTAAAGCTC
3' ss Score
9.12
5' ss Seq
AAAGTATAG
5' ss Score
-1.06
Exon sequences
Seq C1 exon
GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGCGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
Seq A exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCACTGGCGTCATCTGGCATGAATAAAATGCTTCCTTCAGTTCCAGCCACAGCTGTTCGAGTTTCCTGTTCTGGTTGTAAAAAAATCCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGGTCTACGCAGCTGTTCTGCTCTACATTGTGCCTCACTGGATATACAGTTCCACCTGCCCGCCCACCGCCTCCTCCCACTAAGAAAACTTGCTCAAGTTGCTCAAA
Seq C2 exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAATACCACCACTAGTAAAGATTTTTGTAGTCAGTCGTGTTTGTCAACATATGAACTGAAAAGAAAACCTGTTGTTACCATAAATACAAATAGCATTTCAACTAAATGCAGCATGTGTCAGAAGAATGCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.279 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
C2:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTATAGTCATGGCCAACAGCA
R:
AACAGCATTCTTCTGACACATGC
Band lengths:
260-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]