RnoEX0102056 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144924644-144932532:-
Coord C1 exon
chr5:144932448-144932532
Coord A exon
chr5:144931944-144932199
Coord C2 exon
chr5:144924644-144924818
Length
256 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTTTTTTTTAAAGCTC
3' ss Score
10.12
5' ss Seq
AAAGTATAG
5' ss Score
-1.06
Exon sequences
Seq C1 exon
GAGTATGGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTGG
Seq A exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCTCTGGCATCACCTGGCATGAATAAAATGCTTCCTGCAGTTCCAGCCACAGCTATTCGAGTTTCCTGCTCTGGTTGTAAAAAAATCCTCCAGAAGGGACAGACGGCTTATCAGAGGAAAGGGTCAACTCAGCTTTTCTGCTCCACCCTGTGCCTCACGGGATACACAGTGCCACCTGCCCGCCCACCGCCGCCTCTCACCAAGAAGACTTGTTCCAGTTGCTCAAA
Seq C2 exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAATTTGAAAATAGCACCACCAGTAAGGATTTTTGCAGTCAGTCATGCTTGTCAACATATGAACTGAAAAAAAAGCCCATTGTTACCATAAATACAAATAGCATTTCAACCAAGTGCAGCATGTGTCAGAAGAACGCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.198 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
C2:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTATGGTCATGGCCAACAGC
R:
AACAGCGTTCTTCTGACACATG
Band lengths:
260-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]