MmuEX6096135 @ mm9
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126588354-126592909:-
Coord C1 exon
chr4:126592825-126592909
Coord A exon
chr4:126592316-126592571
Coord C2 exon
chr4:126588354-126588528
Length
256 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTTTTTAAAGCTC
3' ss Score
9.97
5' ss Seq
AAAGTATAG
5' ss Score
-1.06
Exon sequences
Seq C1 exon
GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
Seq A exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCTCTGGCATCACCTGGCATGAATAAAATGCTTCCTTCAGTTCCAGCCACAGCTGTTCGAGTTTCTTGCTCTGGTTGTAAAAAAATCCTCCAGAAGGGGCAGACTGCTTATCAGAGGAAAGGGTCTACTCAGCTTTTCTGCTCTACCCTGTGCCTCACGGGATACACAGTTCCACCTGCCCGCCCACCGCCTCCCCTCACCAAGAAGACTTGTTCAAGTTGCTCAAA
Seq C2 exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAATAGTACCACCAGTAAGGATTTTTGCAGTCAATCATGCTTGTCAACATATGAACTGAAAAAAAAGCCCATTGTTACCATAAACACAAATAGCATTTCAACCAAATGCAGCATGTGCCAGAAGAACGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'13-14,'13-11,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.575 A=0.202 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
C2:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTATAGTCATGGCCAACAGCA
R:
GACAGCGTTCTTCTGGCACAT
Band lengths:
260-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: