GgaEX1000565 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4685654-4688416:-
Coord C1 exon
chr23:4688338-4688416
Coord A exon
chr23:4687633-4687885
Coord C2 exon
chr23:4685654-4685828
Length
253 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTATTTTATTTTAGCTC
3' ss Score
10.02
5' ss Seq
GAAGTAGGA
5' ss Score
2.43
Exon sequences
Seq C1 exon
GAGTACGGCCAACAGCCAAAAACTCAGGAAGGGGAGCTGAAAATCAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
Seq A exon
CTCCACAGCTGTCATCAGGTTTCCAGCCTGCTGTGGCATCCTCTGGCATGAGTAAAATGCTTCCTTCAGTTCCAGGCACAGCTGTTCGGGTTTCCTGTTCTGGCTGTAAAAAAATCCTCCAGAAGGGGCAGACCGCATACCAGAGGAAAGGCTCTACCCAGCTCTTCTGCTCCACACTGTGCCTCACTGGATACACCGTTCCAGCTTGTCGCCCACCAGCTTCCACCAAGAAAACCTGCTCAAGCTGCTCGAA
Seq C2 exon
AGAAATTCTAAATCCAAAGGATGTAATCACTGCCCAGTTTGACAATACAAATTCCAGTAAGGATTTCTGCAGCCAGTCATGTCTTTCTACGTATGAAATGAAAAGGAAACCTATTATTACTATTCACACTAACAGCATTTCAACCAAGTGCAGCATGTGCCAGAAGAATGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'8-9,'8-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=48.2),PF064679=zf-FCS=PU(28.9=15.3)
C2:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACAGCCAAAAACTCAGG
R:
TGCATTCTTCTGGCACATGCT
Band lengths:
244-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]