GgaINT0137485 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4683804-4684594:-
Coord C1 exon
chr23:4684444-4684594
Coord A exon
chr23:4683920-4684443
Coord C2 exon
chr23:4683804-4683919
Length
524 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTTCTCTGTTTCACTCTCAGGTG
3' ss Score
11.82
Exon sequences
Seq C1 exon
AAGTCAGCTAAAATTACACCTTGTGCACTGTGTAAATCCTTGAGATCTTCAGCTGAGATGATAGAGAGCACAAATAACTCGGGAAAAACTGAACTGTTTTGCTCTGTTAACTGCTTGTCAGCATATAGAGTAAAAATGGTTACTTCATCAG
Seq A exon
GTAACTTTATTCCTTCATTCTGTTAAAAACATAATTTCCCATTGCTTATATCCAAACTTAACTAGTCTTGAAAGTTAAGGCTGATATTCTTTTCTGGGGAGTGGGGTGTAGAAAGTGGTGTTTGTTTGTTTTAAGGGAAGGTGCTGAGATGGGAACCTAAGGATTTTGTAACATAACTAAACCTAGCAGTGACAGTGTAGCCATTTCAGCTTTGTTTATAGAGATCTTAAAGATGATAAAGAACCTTAATGTATTTTCTGCTGGTGCAAGTGAAGGCCAAGGAGTGGGGGTGGGGAGGGTTCTAGGATCCTAGGGATACTGGGAGATTAATTAAAGGATCTGGCAAACAACGGGCACTGCAGCTGTAGTGTCTGCTTCTCAATCTGAACAAGCTTTGTCTTGTGCTTTAGTGTGTACTTTGTCTTGTCATTCAGAATCTCTGGTTTTCTTTGCGCAGTGCAAAACCATCTGCAGTGGGACTCAGTGTTGCATAAATCACTTTTTCTTCTCTGTTTCACTCTCAG
Seq C2 exon
GTGTTCAAGTTCAGTGCAACAGCTGTAAAACTTCAGCCAACCCTCAGTATCACTTGGCTATGTCAGATGGGAGCGTACGCAATTTCTGCAGCTACAACTGTGTGGTAGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCAGCTAAAATTACACCTTGTGC
R:
AAGCTACCACACAGTTGTAGCTG
Band lengths:
262-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]