HsaINT0186023 @ hg38
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35385442-35386189:+
Coord C1 exon
chr1:35385442-35385592
Coord A exon
chr1:35385593-35386073
Coord C2 exon
chr1:35386074-35386189
Length
481 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTTTATTTTGATTTGCTAAGGTG
3' ss Score
5.47
Exon sequences
Seq C1 exon
AAATCAGCCAAAATTACACCGTGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAAAATACCAATAGCTTGGGGAAGACAGAGCTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCTGCAG
Seq A exon
GTAATATTGGTTTCACAAACTATGAAATGCAATGGTTGAAAAATAATGGTTATTGCTTTGTTTTTAACGGTTTTTTTTGGTTGATTTTTAAGGCACATTTAACATATTTCAGATATTTGTTGTAAAATATCACCTGTTACCTTGATTGCTTATTTATTTACTTGCATACCTATTTATGCATTTCCCCCTTACCAAAAGAATTTCATATGGCTTCTTTAATATATTTTCTTTTTCCCTACCTAATTTCTTTGAAGTTTCATTTATCTGGTAGTTTCAGGGTAGACTTTGACCAATTTAAATTGGAAAGAAACATTTTCAGTATTATGTTAGTTTTTGTCTATATGTGACATGATTTAGTTTCAGTTCCTACAACTTACCCTGGCTCTTAAATTTTCTTATATTGTATAGTATTATTTAATTTCTCATACTTTTGTGTACATTTGTACATATTACTCATTGGTTTTTATTTTGATTTGCTAAG
Seq C2 exon
GTGTACAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATTCCTCAGTATCACCTAGCCATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGCTGTGTGGTAGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463:ENST00000314607:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAAATTACACCGTGTGC
R:
CTGGAAAGCTACCACACAGC
Band lengths:
262-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains