RnoINT0169157 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144920058-144920774:-
Coord C1 exon
chr5:144920624-144920774
Coord A exon
chr5:144920174-144920623
Coord C2 exon
chr5:144920058-144920173
Length
450 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTTTACTTTCATTTGCTAAGGTG
3' ss Score
6.23
Exon sequences
Seq C1 exon
AAATCAGCCAAAATAACACCATGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAGAATACCAATAGCTTGGGGAAGACAGAGCTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCTGCAG
Seq A exon
GTAATACTGCTTTCATAAACTATAAAATGTAATCGTTGGAAAATTAGTTACTACTTTTTTGCTGGCCCAATTTTTTGTCTAAATTTAATCGATTTTTAGTACAAACATATTTCACACTTGTTGTAAAATATTACCTGTTAACCTCATTTACTTGTTTGCCTATTTATGCATCCCCCTTACTGAATGGATTACAAATAACTTTCCTTAATGTATTTTCTTTATCCACATCCAATATATTTCAAGATCCATTTATTTTATAATTTTAGGGTAGATTATGACTATTTAAAATTTTTAAACTTTTTAAATGTTCAGTTAGTTTATGATAGATGTGGCATGATTGAGGTTAGCTTCAGTTCCTATAGTTTAACCTGAAAATTGAAATTTTGTCTGATACGTTAATTCTTCCTAGGTTCACGTGTGACTCATTAGCTTTTACTTTCATTTGCTAAG
Seq C2 exon
GTGTCCAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATCCCTCAGTACCATCTAGCCATGTCAGACGGGAGCATACGCAACTTCTGCAGCTACAGTTGTGTGCTAGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(5.0=3.9)
A:
NA
C2:
PF064679=zf-FCS=PD(92.5=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAAATAACACCATGTGCG
R:
CTGGAAAGCTAGCACACAACTG
Band lengths:
262-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]