HsaINT0186023 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35851043-35851790:+
Coord C1 exon
chr1:35851043-35851193
Coord A exon
chr1:35851194-35851674
Coord C2 exon
chr1:35851675-35851790
Length
481 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTTTATTTTGATTTGCTAAGGTG
3' ss Score
5.47
Exon sequences
Seq C1 exon
AAATCAGCCAAAATTACACCGTGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAAAATACCAATAGCTTGGGGAAGACAGAGCTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCTGCAG
Seq A exon
GTAATATTGGTTTCACAAACTATGAAATGCAATGGTTGAAAAATAATGGTTATTGCTTTGTTTTTAACGGTTTTTTTTGGTTGATTTTTAAGGCACATTTAACATATTTCAGATATTTGTTGTAAAATATCACCTGTTACCTTGATTGCTTATTTATTTACTTGCATACCTATTTATGCATTTCCCCCTTACCAAAAGAATTTCATATGGCTTCTTTAATATATTTTCTTTTTCCCTACCTAATTTCTTTGAAGTTTCATTTATCTGGTAGTTTCAGGGTAGACTTTGACCAATTTAAATTGGAAAGAAACATTTTCAGTATTATGTTAGTTTTTGTCTATATGTGACATGATTTAGTTTCAGTTCCTACAACTTACCCTGGCTCTTAAATTTTCTTATATTGTATAGTATTATTTAATTTCTCATACTTTTGTGTACATTTGTACATATTACTCATTGGTTTTTATTTTGATTTGCTAAG
Seq C2 exon
GTGTACAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATTCCTCAGTATCACCTAGCCATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGCTGTGTGGTAGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(5.0=3.9)
A:
NA
C2:
PF064679=zf-FCS=PD(92.5=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAAATTACACCGTGTGC
R:
CTGGAAAGCTACCACACAGC
Band lengths:
262-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)