BtaINT0164792 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110969186-110969924:-
Coord C1 exon
chr3:110969774-110969924
Coord A exon
chr3:110969302-110969773
Coord C2 exon
chr3:110969186-110969301
Length
472 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTTTATTTTGATTTGCTAAGGTG
3' ss Score
5.47
Exon sequences
Seq C1 exon
AAATCAGCCAAAATTACACCGTGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAAAATACCAATAGCTTGGGAAAGACAGAGCTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCTGCAG
Seq A exon
GTAATATTGGTTTCATAAACTTTATAAATATAATATTTGAAAAAATTATGATTATTGCTTTGTTTTTGTAGTACAGATTTTTGTCCATATTTAATTGATTTTAATGCAAATTAAAATATATCAGATCTGTGTTGTAAAATATCACCTATTATCTTGATTACATGTTTTATGTTTATTTACTTGCTTGCCTATTTGTACATCTTCCTTACCAAAAGAATTTAGGGCTTTTTAAATGTACTTTATTCACACCTAATTTATTTCAAGATTTGTTATTTTTTAGTTTTAGGGTGTAGACCGTGACAACTTTAAATCATCTGAAATATTTTTAGCATTGTTAGTTTTTGTCTACATGTGAGGTAACTAAGTTTAATTTTAGTTCCTGCAACATGACTTGGCCCTTGAATTTTCATGTGTTGTACTTTCTCATACGTTTGTATGTATTACTCATTAGCTTTTATTTTGATTTGCTAAG
Seq C2 exon
GTGTGCAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATCCCTCAGTATCACCTAGCCATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGTTGTGTGGTAGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAAATTACACCGTGTGC
R:
CTGGAAAGCTACCACACAACTGT
Band lengths:
262-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]