DreINT0181051 @ danRer10
Intron Retention
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40494718-40496641:+
Coord C1 exon
chr19:40494718-40494868
Coord A exon
chr19:40494869-40496525
Coord C2 exon
chr19:40496526-40496641
Length
1657 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TGTTTGCATGCTTATACAAGGTG
3' ss Score
2.86
Exon sequences
Seq C1 exon
AAGAGTCTGAAACCTGTCGCTTGCAAAATTTGTCGCACTTTGCACCCGGTTGCCGAAATGCTGGAATGTATGAACGCAGAGGGAATCCGAGAGATTTTCTGCTCTGCCGCCTGTGTCACAGCGAATAAAGTTCAGACTGTCAGTTCTTCAG
Seq A exon
GTAACACCGAAATACCCACCAAGATGCAATATTTATATATAATTAACACTAGCATTTAGATTTATGTAAGTGATGTTTTGTGTCTCTTGAGTTTAATGTCATTGAACAGTCCAGAGCTCACTGTATACAGTTGAAACCAGAAGTTTACATACACTCTAAAAAAAAAAGGATCCTAACCATTTTATAAAAAATATCTGATGGTAAATCATACTAAACGTTTACTATTTTAGGTCCGTTAGAATTACCTGAATTATTACTTTTGCTAAATGCCAGAATAATAAGAGAGAATTTTTTTATTAATTTCTAGACAGTCAAAAGTTTTCATACATTTCCTTGGTGTTTTTTTTTAGCTTTGCTTTTAAACTGTATAACTTTAATCAAATCTTCCACAAGATTCTTACAGTAGTTTGAAGGAATTTTGGCCCATTCCTCCTGACAGAATTAGTTTAACTGAGTCCGATTTGTTGGCTGTCTTGCTCGCACAAGCTTTTTTAACTCTGCCCACACATTTTCTATAGGATTGAGATCAGGGCTTTGTGATGGCCACTCCAAAACATTCACTCTGTTGTCCTTAAAGCACATTTTAACTAATTTGGCATTATGCTTAGGGTCATGGTCTGTTTGGAAGACCCATTTGTGGCCAGGTTATAATTTACTGGCTGATGTCTTGAGATGTTGCTTCAGTATTTCTACATAATGTTCTTTCTTCATGACTCCATCTATGCTGTGACGTGGACCATTCTCCTGCAGCGAAACAGCCCCACAACATGATGCTGCCGCCCCCATACTTCACAGTTGGGATGAAGTTCCTAGGCTTGTAAGCTTTCCCCTTTGTCCTCCAAATGTAACACTGATCATTATGACCAGACAGTTCAATCTTAGTTCCATCAGACCACAGGACATGCCTCCAAGAATTATTCTATTTCCCAGTGTAATTTAACAAATTGTAATCTGGCTGATTCTGGTTTGTTGAGTTTTCCATGTTGTCACACAAGGAAGCAGTGTGTTTGAGGTTTTCCTTGAATACTATTCTATAGTTATGCCTCCAATTAACTCAAATGTTGCCAATTAGCCAATCAGAAACTTACAAAACCTTGACACCATCATCTGAGCTTTGTCAGAGGCATATTAATCTTATTGTATGTAAACTTGACCTTAAAGAAAAGTAATAACAGTTTCTCAAAAAATATCTCTCATTATTCTACTATTAAGCAGAACAGAAATACATTTGATAATCCTAACTTGCCTAAAAGACAAAAAGTTTAGTCACATTAACATCTGACTTTTTTTTAATGGTTATGTGCCTTTTCTATACAGTGTATGTAAACTTCTGGTTTTAACTGTAGATAGGAAAAGAGTGCGTTACCTTCATTACTTTAACAAACCAACTGCGTTACAGGTGGTTTGTGAAGCCCACTCATCTGCGTGTAGCACACTCAGAATTGCTCAATTTGTTACAAGAAGTTTAGGATGCTTGTAAGTAAGTCTCTGGTGCATATTGTCCCTTGTTTAATACTCTAAATGAATAAATTACCAGGGCATTACAGGTGGATGTCAAGCCCACTTATCTCCATGAAGCACACTTGGAATCGCAGTGTTTTTCAGAAACATCGAGGTTTAAGTTCCAATGTGTCTTTTGTTTGCATGCTTATACAAG
Seq C2 exon
GTGCTCCCGTGGAATGCAACAGCTGTAAGCAGAAGCTGGTGCCTCAGTACCATCTGGCCATGTCTGATTCAAGCATCCAGAACTTCTGCTCCTTTTCTTGTGTAGTGTCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823:ENSDART00000140926:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTCTGAAACCTGTCGCT
R:
ATGACACTACACAAGAAAAGGAGCA
Band lengths:
262-1919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]