HsaINT0185969 @ hg19
Intron Retention
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:26253]
Coordinates
chr1:35575895-35577513:+
Coord C1 exon
chr1:35575895-35576048
Coord A exon
chr1:35576049-35577372
Coord C2 exon
chr1:35577373-35577513
Length
1324 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
AATCTTTTTATTGTTGTCAGTAA
3' ss Score
3.05
Exon sequences
Seq C1 exon
AAACCTGCCAAACCACTTATATCTGTTCCTTGCAAACCATTGAAGCCCTCAGATGAAATGATTGAGACTACGAGTGATTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCATACAGTAAAGCTAAGATGGAATCTTCTTCAG
Seq A exon
GTAATGTTTGTTTAGCAATTGTAGGGGTTTAGTAATTATTAATAAATAATATTATTTGACTTTAATTTATAACCTTGATTCATTTTCAAATTAAACCGACTTTTAAAAGTCAAAACAATCTAAACTTGTTGCAAAGAACTGTTTTTCAGTATTTTTGTATAAAAGGAAGGCTACTTTACCACCAGAGATTTAATATTTGTAGGCCAAGCACGGTGGCTCATGCCTGTATTCCCAGCACTTTGGGAGGCCAAAGTGGGCAGATCGCCTGAGGTCAGGAGTTTGAGACCAGCCTGGGCAACATGTTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCTGGGCGTGTTGGTGGGTCCCTGTAGTCCCAGCTACTTAGGAGGCTGAGACAGGAGAATCATTTGAACCTGGGTGGTGGAGGTTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGTCTGGGTGACAGAGTGAGACTCCATCTCAAAAATAATAATAATAAAAATTAAAAGATACATGTCTTTTTTTAGATTATTTAGTAAATGAATATATGTATGTTTACATCAATATATATTGAGCACCTACTGCAAAACATGGTACATAGGAGGCACTTGGTCAATATAGAGTTTAATACATTTACAAGACTGCTTTTATTAGAATATAGAATGTTTTACTTAGCCCTGTTTTGTAAAAACAAGTTTTCATTACATTTTTCACATGAAATAGAAGTGATTGTAAATGCTTTAAGACTCAATAATAAAAAAGCACAAATAATCTGAGCCAACTAAGTATTCCATCAAAAAGCCTCATGTAGGACCAGTGGTGCTATTTACATAGACCATAGAGTGACTAATGCCTCTGGGATTTGTAAGTCATACAAACTGGCTTGTTACAGAAATTTCTGCAATAGTGGCTTGGGCACCAACCTAGCGCTCCATTGATGTTAAGGTTTATGAATCCTGGAAGAGTTTGAAATAGATGCCCATTAGGAGATTCAATCAGAATCTCTTTTCTTCATGAGTAATTTCACAGAAAAATTTGCTCATAATTTTAAACAAATTCTTTAAAAGGACTGGGAAATTGTGTACAAAGGTAAAAGACATAAAATGTTGGAGAAGTGTAAATTTTCAGTGTAATGTTGTAATTATAAATACGATACTAAAGAACCTGGCTATTCCTAAGCCCTAATAAAAATTACTTCAGTACCTACCAATTCCTTAAGCTATTAGATGCTTGCATTATTTCTTTAAACAGTATTACTAAACAGTACTTTCTGATGATTGATTTTGCCTTGTTTATAAGAAATCTTTTTATTGTTGTCAG
Seq C2 exon
TAAGTGTTGTTTCTGTGGTGCATGATACTTCAACAGAGCTTCTTTCTCCAAAGAAAGATACGACTCCAGTTATAAGCAATATAGTGTCATTGGCAGACACCGATGTTGCCTTGCCCATCATGAACACTGATGTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056-ZMYM1:NM_024772:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=61.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTGCCAAACCACTTATATCTGT
R:
TTGTAAGACATCAGTGTTCATGATGG
Band lengths:
294-1618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)