GgaINT0137490 @ galGal4
Intron Retention
Description
NA
Coordinates
chr23:4310692-4312392:-
Coord C1 exon
chr23:4312242-4312392
Coord A exon
chr23:4310833-4312241
Coord C2 exon
chr23:4310692-4310832
Length
1409 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTTCTGTTCATTCCATCCAGCAA
3' ss Score
7.28
Exon sequences
Seq C1 exon
ATGGCAAAGTGTGATGGTTGTAAGAGACAAGGTAAACTCAGCGAGTCCCTGAAATGGCAAGGAGAGGTGAAGCATTTTTGCAATCTGCTTTGTATTCTGATGTTCTGTAAGCAGCAACGTATTCCTGACCCTCCAGCCTCAAACAACACAG
Seq A exon
GTAAAACAGGATGTGACCAGCATTACCTCTTAATGTGTGTGATAATGATAGGAATGTTAATTTGGAAATTCAGTTTAGTGAAATCTCTAAGACCCTCTATGGGGGTGCTTGCCCATTGTAATTGAATGGGTTCAGTTTAAGATATGCCTTTTACTTAAGGCAGTTTCAAACTTCCATAGGTATGAAATGACGTTCATAAACCAAACCTATATTTTGATTTTAAATATTAAACATAAGCACTTACTTTTCATCTACTTTCCTAAAAAGGAAAGCCCATTTTAATAGGCTGAAATGTACTGATATCTACTGAAGACATGACAAATAGTTAGCTCCCTGTATTTGATAAGACAAAGGAGAATGTTAATGTTCGTTTAGCAAGAAAAGTCAAGTGGAGAAATGTTTAGATTCAATGGTTGTAAATATACATTTCGATGTATGCACTTAAAGTTGCTGGTTCTGTGTTGTCAGTAGGTCTTTGAAGACTTACATTTTCTGTGTCATGAGTATCAATTCTGAGATTAATGTATGTTGTAGCTGTTTTGTTGCTCATTATTTCAGCAGGTGGAATGGGGAGGAGGGTGGGAGTGAAGCCCACAGGAATAGGAACTGTGAGTTTCTGTAGGGAATGAAATGCAAAGGGAAGAAAGGAAGAAAGGCGCACAAAGACAGGAAGAGGAAGCGAAACAAAGGGCAGAAATAGCACTGATCCTAAAGAGGGGCATGTTCTCCCAGAGAGTGATGGTGACTGCAACAGTAAGGTACCCATTAAGCAATAAAGAATATTAACTGACAGTTTATAGTATGCATCAGCCCATACTATATTGAACTCTGTGCACATCTCCTGCTTACCTTGGTGGGGGTTGTTTTCTTTGACTACGAGTAACATATAAGTAACTCTATACCTTCAGGCCATAATTACAGTGTGTGATGTTCCTGATTTTAATCAGTATGTTTGGCTGTTAGTAAGGAAGTGGCTCAGAACAGTGTTTGTAATGAAATGCAATTATGATGCTTTCAAATAGTAAGAACCTAAAAGTTCCTCTGCAAGAGTCTCATAAAATTCACCTCATTCATTATATGTTAGGATCTTGAGGATGGTACTGAGCACAGTGGGGCATCTGCTCCTGTTGTCTCCTGAGTGCTGCTCTAAGACACGTACTATTAGAGACAGAAAACTGCTTTCATACTGTGATAAACTTCTGAAAAGTTTCAGTGAATTGAAAACAGCTGAAGTTTGCTTATGGATCCAGCTTCTATTTAAGCTGAAAACCTCCAGGTTGACACACTCTCCTCATAAAGCAGGCTTTTTCATCTGGAAATAAATCCGGAGGGTGGATGTTGTTTCAGAAATGCCACTGTGTCTATCATCGTATTGCTTATTTCTGTTTTCTTCTGTTCATTCCATCCAG
Seq C2 exon
CAAACCCTTCTACAGCACCAGCTTCCTCATCAGGCCCACCTTCTTTGAGGAAGGACTCAACCCCAGTCATAGCAAATGTGGTGTCCCTTGCGAGCACCCCTGCTGCCCAGCCTACGGTTAACTCCAACAATGTTTTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003942:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=NA C2=0.284
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(91.9=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAAAGTGTGATGGTTGT
R:
AAAACATTGTTGGAGTTAACCGT
Band lengths:
287-1696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]