BtaINT0164771 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110965641-110966479:-
Coord C1 exon
chr3:110966329-110966479
Coord A exon
chr3:110965782-110966328
Coord C2 exon
chr3:110965641-110965781
Length
547 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTTTTGTTTATTTTAATCAGCAA
3' ss Score
4.98
Exon sequences
Seq C1 exon
ATGGCAAAATGTGATGGTTGTAAGCGACAGGGTAAGCTCAGTGAGTCCTTGAAATGGCGGGGAGAAATGAAACATTTCTGTAACCTGCTTTGTATTTTGATGTTCTGTAATCAGCAAAGTATGTGTGACCCACCTTCACAAAACAATGCAG
Seq A exon
GTAAAATTAAACTTGAGTCTTAGGTCAATGCCAGGGACTAACTACTCTTCCACAGATTGAGAACTTTAAACAGTTGTAAATAATTTCATGAATTGTAGATTTCATTCTGTTCAAATCACATTAACATGTAGATCCCTTTTGTTTAACACCTTAGGTTAATGCCCTAAATTCTTTCAGTTTTCTCTGAGCATATTTAGTCAAATAAACTCTGTAAGAACTTTATGGGAAAGAATGGCAGTTAACGTTTTATAGTTGAAGATACACATCTTGACTTCTTTAGAAAAGCACTTAAGATTATAACAAAGAACATGGAATCTAAACCACATAGCCTTTTGTATATACCACATGCATAGTTATGCAAGCGAAAGTACATGGAATACTTTTAAGGTTTAGTAATTTAAAAATAGAAAAAAATACAGTTAATCTTGAAGTGACTCTTTATTTTACTCTAACATAAAAGCATTGTTTAACCATCTTAAGATGTTGGTTTCTATGTATGTTCATATAAATTACATGAGGTTTTCTTATTTTTGTTTATTTTAATCAG
Seq C2 exon
CAAGTATTTCCATGGTGCCAGCTGCTTCAGCAGGGCCGCCATCTCTAAGAAAAGATTCAACTCCAGTTATAGCTAATGTGGTATCATTAGCAAGTGCTCCTGCTGCTCAGCCCACAGTGAATTCTAACAGTGTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(87.2=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAAAATGTGATGGTTGTAAGC
R:
AGACACTGTTAGAATTCACTGTGGG
Band lengths:
286-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]