HsaINT0186028 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35855549-35857953:+
Coord C1 exon
chr1:35855549-35855699
Coord A exon
chr1:35855700-35857812
Coord C2 exon
chr1:35857813-35857953
Length
2113 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTTTTGTTTATTTTAATCAGCAA
3' ss Score
4.98
Exon sequences
Seq C1 exon
ATGGCCAAATGTGATGCTTGTAAGCGACAGGGTAAACTCAGTGAGTCCTTGAAATGGCGAGGGGAAATGAAACATTTCTGTAACCTGCTTTGTATCTTGATGTTCTGTAATCAGCAAAGTGTATGTGACCCGCCTTCACAAAATAATGCAG
Seq A exon
GTAAAATTAACCTTAGGTACTGAATGGAGTCTTTGGTCAATACTAGGAACTACTGTTCTTTTACAGATCAGGAACTGTGTAAACAGTTGTCATTAATTTCATGAAACCTCAGTTTCCTTGTATTCTGTATCAATAACATTTAGCTTTTTTTGTTGAACACCTTATTTCACTGTCGTCCGTGTGAAGAGACCACCAAACAGGCTTTGTGTGAGCAACAAGGCTGTTTATTTCACCTGGGTGCAGGCGGTCTGAGTCTGAAAAGAGTCAGTGAAGGGAGATGGGGTGGGGCCGTTTTATAAGATTTGGGTAGGTAAAGGAAAAAGGGGGGTTGTTCTCTGGCGAGCAGGAGTGGGGGTCACAAAGTGCTCAGTGGGGGAGCTTTTTGAGCCAGGATGAGCCAGGAAAAGGAATTTCACAAGGTAATGTCATCAGTTAAGGCAGGAACAGGCCATTTTCACTTCTTTTGTGTTGGAATGTCATCAGTTAAGGCAGGAACCGGCCATCTGGATGTGTACCTGCAGGTCAGAGGGGATATGATGGCTTAGCTTGGGCTCAGAGGCCTGACACCTTAGATTAAAGCTGAGTAAAAATGAGTTTTTGATTAAATAGATTTCTTTGAGAATATTGAATCAAATAAACTCTGTAAGAACTTAAATTTATGGGAAAGGATAACAGTTAATGGTTTGTAATTGAGTATAATTGGCTTCCTTAAAAAATCCTTTGAGACTACTTATAACAAAAGACATAAAGTCAAAATCACATGGCCTTTTAAATATACCATGTGCAGGCCAGATGTGATGGTTCATGCCTGTAATCCCACCGCCTTTGGAATGCTGAGGTGGGAGGACGGCTTGAGGCCAGGAGTTCAGGGGTGGAGTGAGCGGTGACCACAGCACAGCAATCCCAGCTGGATGATATAGTGAGACCCTGCCTCTAAAAAATTAAAATAAAATAAAACTATATGTCGTGGGCGTGACTAGTTGGGGCCAGTGTCACGGGCTGTAAAGGAATTTACCAAGACAGTCATAGGTAAAGGCAGATTTATTGGAGAAAGTGTGAAAATATGTTGCAAGGTTGCAGTGAGCAGCACAGCAGAGAAGGGGAAGTCTGCAAAGACGCAGCGGCTTGAGGGACGTTTTACATGGTCCTGCTGGAGGGGACTGCTTGCAGAATGTAGCCGTGCTCCTGGGGCTACCTGTAGGAGGTCATCTCTCAGAGTAATTACTCATTGTTCTCCCCCACCTGGGCCCCTTCCTCTTTGTTGCTTACTTACCTTGTCAGGACTTACTTATCTTATCAGGACTACACACTATGTGCTAGGCCACTTTATCTCAGAAAATTTATTATTTAAAAACAACACTAGTATCATCCTGAAAGCTAGAAGAATTTAAGTGTAGTCTCCTTACAAATAAAAGCAAAATCTACAAGAGCCTACTCCAAAACTTAAAAAAAAATTATTTCTATATAAAGGCAAGATTTAAGAAAAACATTAGGCTGAATTGTCCATTAAATCTAACCTGTGATCTTCATTGGTATTGTGTGTTTGAGGATTTGCATTGTTGGTTTTTAAGTTGGTTTTTAAGTTAGACTATTTGTTGCCTTTTTTATGTAAAGATAAAGTTAATAGAAAACTTTCAAGTTTTACTAATTAAAAAGTAGAAAACCAGGGTATGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACGAGGTCAGGAGTTTGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCTGGGTGTGGTGCTGCGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATCGCTTGAACCCGGGAGGTGGAGGTCGCTGTGAGCTGATATCGTGCCACTGCACTCCAGCCTGGGCAGCAGAGTGAGACTCTGTCTCAAAAAGAAAAAAAAAAAGAAGAAAACCAAAACCCAGTTAATCCTAAAGTGACTTTTTGCTCCAACAGAAATTACTCAAACCTGAAAACATTGTTTAACTTCCTTGAAATGGTTTCTGTGTAAGTACATATAAATCACGTGAGGTTTCCTTATTTTTGTTTATTTTAATCAG
Seq C2 exon
CAAATATTTCCATGGTTCAAGCTGCTTCAGCAGGACCCCCATCTCTGAGAAAAGATTCGACTCCAGTTATAGCCAATGTAGTATCATTGGCAAGTGCCCCTGCTGCTCAGCCTACAGTGAATTCTAACAGTGTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(91.9=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)