RnoINT0169162 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144915073-144916596:-
Coord C1 exon
chr5:144916446-144916596
Coord A exon
chr5:144915214-144916445
Coord C2 exon
chr5:144915073-144915213
Length
1232 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTTGTTTCTCTTTTAACTAGCAA
3' ss Score
6.71
Exon sequences
Seq C1 exon
ATGGCCAAATGTGATGGTTGCAAGAGACAGGGTAAACTCAGTGAGTCTTTGAAATGGCGAGGTGACATAAAACACTTTTGTAACCTGCTTTGCATCTTGATGTTCTGTCATCAGCAAACTGTATGTGACCCACCTTTACAAAACAATACAG
Seq A exon
GTAAAATGCAGTGAGGAATATGTGAACTCTTATCAGGACAAGGAGCTAACTATTTTACTTCTGCAGATTAGAATATATAAATTGTCAGTAATTTTATGAAATACAAATCTTATTATGTTCAAATGCTGTTAACAAGCTGGGCATATTGGTGCACGCCTTTAATCCTGCATTTGGAAAACAGAGGCAGGCAGATCTCTTGAGTTCAAGGACAGCTAGGACTGCATAGAGAGACCCTGTGCCAAAACAGCAGCAGCCACAACAATAAAACTAAACAAATATCATTAACATTTAGATGATTTATTGAGTACCTGAAAGCAAATGATTTTGTTTGTTTGTTTATTGAGACAGGATTTCTCTGTGTAAGAGAGTCCTAGCTGTCGTGGACTATGCTGGTCTTAAACTCTTAAGAGATCCTGGTCCCTCCGAGTGCTGGGACTAAAACCTTGTACTACTATACCAGGCAGGCAAATAAATTTTATTGTTGCTTTTTCTCAGAATACTGACTTAGCCCTACTCAATTTTCTGGAAAAGAGTGACATTTACAGTTTTTAAATTCTGTATACACGTTGACTTCCATAATGAGAAGATTTCAGATCCCATGGGCCTTTAAATATACCACATGTATATAGTCAGGCATGGTGGAAATTGTCTCTAGTTTTACTCAGGGAGGTGATCAAGACTTCTAGGAGAGCATGAGCAGCCATATAGTGGGTTACATAGTGAGTGAGACCTGTGTCAATCAACAACCAACTGTATACATATTTAGGGCATAAAAATCTTAGAAGCTTTATGATTTGGAGCACAAATTAGTGCCGCTCTGAATGAAACCCAGAAGAATCTAAACAAGGGCCTACTCTAGAAGCTCCTTACAAAGTCCTTCACATATGAAGGTAAGATTTCAGAAACATCTTTGTTTTATATTCTCATTAAATCTACTTTGTCTTGTCAGTAGTTGGAATTGTGTCTTTGGACATTTTTGTTGAGAGACTTTCAAATTTCATTAATCAAAAACTAGCAAACAATGCAGTGATTTAGTGAGAAAGAAAAACCATTACACTTGATCTTACCGAAAGGCCAAGAAATGATAAAACAAGCCCCTTCATTTCTGAAGTTTCTCTGCCCCGTAGCAACTTACTCAATCCTGGAAACATTGGTCTCCTTTGAGCTGTTGCTTTCTCTGTAAAACATACGTAAATTATATGAGCTTTCTTCTTTGTTTCTCTTTTAACTAG
Seq C2 exon
CAAGTATTTCCATGGTTCAAGCTGCTTCTGCGGGCCCCCCGTCCCTCAGAAAGGACTCGACTCCCGTTATTGCTAATGTGGTCTCTCTAGCAAGTGCTCCTGCTGCACAGCCCACAGCAAACGCTAACAGCGTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(91.9=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAATGTGATGGTTGCA
R:
TTTGCTGTGGGCTGTGCAG
Band lengths:
271-1503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]