RnoEX0102043 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144915073-144916596:-
Coord C1 exon
chr5:144916446-144916596
Coord A exon
chr5:144915556-144915679
Coord C2 exon
chr5:144915073-144915213
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCAACTGTATACATATTTAGGGC
3' ss Score
5.75
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGGCCAAATGTGATGGTTGCAAGAGACAGGGTAAACTCAGTGAGTCTTTGAAATGGCGAGGTGACATAAAACACTTTTGTAACCTGCTTTGCATCTTGATGTTCTGTCATCAGCAAACTGTATGTGACCCACCTTTACAAAACAATACAG
Seq A exon
GGCATAAAAATCTTAGAAGCTTTATGATTTGGAGCACAAATTAGTGCCGCTCTGAATGAAACCCAGAAGAATCTAAACAAGGGCCTACTCTAGAAGCTCCTTACAAAGTCCTTCACATATGAAG
Seq C2 exon
CAAGTATTTCCATGGTTCAAGCTGCTTCTGCGGGCCCCCCGTCCCTCAGAAAGGACTCGACTCCCGTTATTGCTAATGTGGTCTCTCTAGCAAGTGCTCCTGCTGCACAGCCCACAGCAAACGCTAACAGCGTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'34-28,'34-27,35-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(91.9=66.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000016992fB17071
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAATGTGATGGTTGCA
R:
GCACTTGCTAGAGAGACCACA
Band lengths:
247-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]