RnoALTD0034730-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145110260-145114533:-
Coord C1 exon
chr5:145112968-145114533
Coord A exon
chr5:145112966-145112967
Coord C2 exon
chr5:145110260-145110388
Length
2 bp
Sequences
Splice sites
5' ss Seq
TGTGCCCCA
5' ss Score
-32.41
3' ss Seq
TTTTTGTTTACTTTTGTCAGTTA
3' ss Score
5.52
Exon sequences
Seq C1 exon
CAAGGCCCTGGGTTTGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAGAAAGGGACTCTCTCTGTGAGCAGAATTCAGGAGCATTTTATGTTTTACTAACAGGACGAGGAGCCAGGTGGTCTGGAGGCAGAGTCAGGCAGATCTCAGTGAAGTCAGCCAGTCTGTATAACCAAGTTCCAGACCAACCAGAGTTACTTGTCTCAAAGAAAAAAAAGTCATATTAATAAAAGACTAAAATGAAAATTTTCCTGTGCCCCACCCCCTCTAAATTTTCAAGACAGGGTTTCTCTCTCTGTGGCCTTGGCTAGAACTGTCTCTGTAGAACAGGCTAACCTGAAACTCAAGTTTAGTTATTAGATTTAAAGTGTGTACCACCATGCCTGGCTTGTTCTTTCTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
GT
Seq C2 exon
TTAATGTTTCCATGGTGCACAGTGCTTCAAAAGAGAATGTCTGTCCTAAGAAATACCCAGTCATAAGCAGTATAATGTCATTAGTAAACAATCGTGCTGACCTGGTCGTGAATACTGATCTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855-11-9,12-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGCGCTTCCTTTTCTTT
R:
ACATTCTCTTTTGAAGCACTGTGC
Band lengths:
97-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]