GgaEX1000547 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4679958-4681992:-
Coord C1 exon
chr23:4681842-4681992
Coord A exon
chr23:4680292-4680432
Coord C2 exon
chr23:4679958-4679995
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTTCATTCCATCCAGCAA
3' ss Score
7.28
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
ATGGCAAAGTGTGATGGTTGTAAGAGACAAGGTAAACTCAGCGAGTCCCTGAAATGGCAAGGAGAGGTGAAGCATTTTTGCAATCTGCTTTGTATTCTGATGTTCTGTAAGCAGCAACGTATTCCTGACCCTCCAGCCTCAAACAACACAG
Seq A exon
CAAACCCTTCTACAGCACCAGCTTCCTCATCAGGCCCACCTTCTTTGAGGAAGGACTCAACCCCAGTCATAGCAAATGTGGTGTCCCTTGCGAGCACCCCTGCTGCCCAGCCTACGGTTAACTCCAACAATGTTTTACAGG
Seq C2 exon
GTGCAGTCCCTACCGTGACAGCAAAAATAATAGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.549 C2=0.077
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(91.9=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAAAGTGTGATGGTTGT
R:
TCTCCTATTATTTTTGCTGTCACGGT
Band lengths:
188-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]