RnoEX0102044 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144914363-144916596:-
Coord C1 exon
chr5:144916446-144916596
Coord A exon
chr5:144915073-144915213
Coord C2 exon
chr5:144914363-144914400
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTCTTTTAACTAGCAA
3' ss Score
6.71
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ATGGCCAAATGTGATGGTTGCAAGAGACAGGGTAAACTCAGTGAGTCTTTGAAATGGCGAGGTGACATAAAACACTTTTGTAACCTGCTTTGCATCTTGATGTTCTGTCATCAGCAAACTGTATGTGACCCACCTTTACAAAACAATACAG
Seq A exon
CAAGTATTTCCATGGTTCAAGCTGCTTCTGCGGGCCCCCCGTCCCTCAGAAAGGACTCGACTCCCGTTATTGCTAATGTGGTCTCTCTAGCAAGTGCTCCTGCTGCACAGCCCACAGCAAACGCTAACAGCGTCTTACAAG
Seq C2 exon
GTGCAGTTCCAACAGTAACAGCGAAAATCATCGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'34-30,'34-28,36-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(91.9=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000016992fB17071
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAATGTGATGGTTGCA
R:
TCCCCGATGATTTTCGCTGTT
Band lengths:
187-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]