Special

MmuEX0053933 @ mm9

Exon Skipping

Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126577176-126579937:-
Coord C1 exon
chr4:126579787-126579937
Coord A exon
chr4:126577849-126577992
Coord C2 exon
chr4:126577176-126577213
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTCCTCTTTTAAGTAG
3' ss Score
6.76
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ATGGCCAAATGTGATGGTTGCAAGAGACAGGGTAAACTCAGTGAATCATTGAAATGGCGAGGTGACATAAAACACTTTTGTAACCTGCTTTGCATCTTGATGTTCTGTCATCAGCAAACTGTATGTGACCCACCTTTACAAAACAATGCAG
Seq A exon
TAGCAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGGGCCTCCGTCCCTCAGAAAAGATTCAACTCCAGTCATTGCTAATGTGGTATCTTTAGCAAGTGCTCCTGCTGCCCAGCCCACAGCAAACACCAACAGCGTCTTACAAG
Seq C2 exon
GTGCAGTTCCAACAGTTACAGCGAAAATCATTGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'25-25,'25-22,26-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.122 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF064679=zf-FCS=PD(91.9=66.7)

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000101714





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000030630, ENSMUSP00000120813
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:35392212-35392352 
HIGH PSI
HsaEX1044774
(ZMYM4)
Human
(hg19)
chr1:35857810-35857953 
Rat
(rn6)
chr5:144915073-144915213 
HIGH PSI
RnoEX0102044
(Zmym4)
Cow
(bosTau6)
chr3:110965641-110965781 
HIGH PSI
BtaEX6019000
(ZMYM4)
Chicken
(galGal4)
chr23:4310692-4310832 
HIGH PSI
GgaEX1000547
([1])
Chicken
(galGal3)
chr23:4680292-4680432 
HIGH PSI
GgaEX1000547
([2])
Zebrafish
(danRer10)
chr19:40505563-40505715 
HIGH PSI
DreEX0087963
(zmym4)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGGCCAAATGTGATGGTTGCA

				
R: 
ATCCCCAATGATTTTCGCTGT

				
Band lengths: 
188-332

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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