HsaEX1044774 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35389948-35392684:+
Coord C1 exon
chr1:35389948-35390098
Coord A exon
chr1:35392212-35392352
Coord C2 exon
chr1:35392647-35392684
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTATTTTAATCAGCAA
3' ss Score
4.98
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGGCCAAATGTGATGCTTGTAAGCGACAGGGTAAACTCAGTGAGTCCTTGAAATGGCGAGGGGAAATGAAACATTTCTGTAACCTGCTTTGTATCTTGATGTTCTGTAATCAGCAAAGTGTATGTGACCCGCCTTCACAAAATAATGCAG
Seq A exon
CAAATATTTCCATGGTTCAAGCTGCTTCAGCAGGACCCCCATCTCTGAGAAAAGATTCGACTCCAGTTATAGCCAATGTAGTATCATTGGCAAGTGCCCCTGCTGCTCAGCCTACAGTGAATTCTAACAGTGTCTTACAAG
Seq C2 exon
GTGCAGTTCCAACAGTAACAGCGAAAATCATCGGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463_MULTIEX3-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(91.9=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAAATGTGATGCTTGT
R:
TCACCGATGATTTTCGCTGTT
Band lengths:
188-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains