DreEX0087963 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40502176-40508300:+
Coord C1 exon
chr19:40502176-40502341
Coord A exon
chr19:40505563-40505715
Coord C2 exon
chr19:40508263-40508300
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTGATGGTTGTTTTCCTCAGGGA
3' ss Score
8.6
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAGATCAAGTGCTCCATGTGCAGACAGGCCAAGAAGATGACGGAAACGGTGAAGTGGGTGGGAGAGATTAAGCATTTCTGCAGCTTGCAGTGCTTGATGTTTTTCTGCAGTCTGCAGGGCACCACTGGGACTGTCAAACCTCAAATCAAACCTCAGCCCACTCAAG
Seq A exon
GGACAAGCCCAGCACCTTCTCCAGCCCCTCAAAGTACAGTTAATCTGGTGTCACCGACCACTAAAGAGACCACGCCAGTCATTGCCAATGTTATCTCGCTTGTAAATGCATCCAATGGACAGCCGACGGTTTTGGGAAACAGTGTTTTGCAAG
Seq C2 exon
CTTCTGTTCCAGCTGCTGCTACAAAAAGTTCAGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.394 C2=0.692
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(94.1=57.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCAAGTGCTCCATGTGCA
R:
TTCCTGAACTTTTTGTAGCAGCA
Band lengths:
202-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]