BtaEX6019000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110965269-110966479:-
Coord C1 exon
chr3:110966329-110966479
Coord A exon
chr3:110965641-110965781
Coord C2 exon
chr3:110965269-110965306
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTATTTTAATCAGCAA
3' ss Score
4.98
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGGCAAAATGTGATGGTTGTAAGCGACAGGGTAAGCTCAGTGAGTCCTTGAAATGGCGGGGAGAAATGAAACATTTCTGTAACCTGCTTTGTATTTTGATGTTCTGTAATCAGCAAAGTATGTGTGACCCACCTTCACAAAACAATGCAG
Seq A exon
CAAGTATTTCCATGGTGCCAGCTGCTTCAGCAGGGCCGCCATCTCTAAGAAAAGATTCAACTCCAGTTATAGCTAATGTGGTATCATTAGCAAGTGCTCCTGCTGCTCAGCCCACAGTGAATTCTAACAGTGTCTTACAAG
Seq C2 exon
GTGCAGTTCCAACAGTAACAGCAAAAATCATTGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(87.2=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAATGTGATGGTTGTAAGC
R:
CCCCAATGATTTTTGCTGTTACTGT
Band lengths:
186-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]