RnoEX0101999 @ rn6
Exon Skipping
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145105997-145110388:-
Coord C1 exon
chr5:145110260-145110388
Coord A exon
chr5:145110080-145110117
Coord C2 exon
chr5:145105997-145108878
Length
38 bp
Sequences
Splice sites
3' ss Seq
GCTTTAATTTGTTTCAACAGGTA
3' ss Score
10.67
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TTAATGTTTCCATGGTGCACAGTGCTTCAAAAGAGAATGTCTGTCCTAAGAAATACCCAGTCATAAGCAGTATAATGTCATTAGTAAACAATCGTGCTGACCTGGTCGTGAATACTGATCTCTTACAAG
Seq A exon
GTACACTTTCTTCTGTACCTACAAATGTCATTGTGAAC
Seq C2 exon
AGCTCAGCCAGTGAGTCCAGCAGTGGTGTTGGAAATAGTGTGGACCAGCCAAGCCTCCCCCCGCCTTCCTCTGTGCTCGGTGAGGACAAAGCTGCTCCCAGTGAGGAGGTCCAAAACAACAGTGAGACAAACCAGGATCCTACATATAGCATGACATCCGTGAAAGGAAATGATCAGCCATGTTTCTCAAAGTCTACATCCACAGAACAGAAGATTAAGAGTGAGCCACAGCCTGCTGGAGAGCTGTGGAGCCCAGGTTCCCAGCATCTGCGTCCCAGTACTGCCAATGAGATCGCTTTCTGCTATTCTTGCTACTTGTTCTACCAGAAAAAAGTCAGCTGTCGGAGAGAAGCTTTTGCAACCAAAGGAGCTGCTGCTGACTGGGAGAGAATGCTGGAAAATTTCAGACGGCATGAAGAAAGCGAAGGGCACTTAAAGTCCCTGCGATTTTGGAGGCAATGCCAGTTTCTCGATGCCGTTCCACATAACGATTCATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855-'14-12,'14-10,15-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.173 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF142911=DUF4371=WD(100=30.6),PF056999=Dimer_Tnp_hAT=WD(100=11.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACCTGGTCGTGAATAC
R:
CTTTGTCCTCACCGAGCACAG
Band lengths:
126-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]