GgaEX6025132 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4678610-4680441:-
Coord C1 exon
chr23:4680292-4680441
Coord A exon
chr23:4679958-4679995
Coord C2 exon
chr23:4678610-4678754
Length
38 bp
Sequences
Splice sites
3' ss Seq
GTTGCTTTTTTTCTCCACAGGTG
3' ss Score
12.52
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TCCATCCAGCAAACCCTTCTACAGCACCAGCTTCCTCATCAGGCCCACCTTCTTTGAGGAAGGACTCAACCCCAGTCATAGCAAATGTGGTGTCCCTTGCGAGCACCCCTGCTGCCCAGCCTACGGTTAACTCCAACAATGTTTTACAGG
Seq A exon
GTGCAGTCCCTACCGTGACAGCAAAAATAATAGGAGAT
Seq C2 exon
GCTAGTACTCAGACAGATGCCCTAAAACTGCCATCTTCACAGCCACCTAGGCTCCTAAAAAACAAAGCATTGTTGTGCAAGCCAATCACGCAGACTAAGGCCACCTCATGCAAACCTCATACACAAAATAAAGAATGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.077 C2=0.544
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTGGTGTCCCTTGCGAG
R:
GTGGCTGTGAAGATGGCAGTT
Band lengths:
114-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]