RnoEX6023376 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144913306-144915213:-
Coord C1 exon
chr5:144915073-144915213
Coord A exon
chr5:144914363-144914400
Coord C2 exon
chr5:144913306-144913450
Length
38 bp
Sequences
Splice sites
3' ss Seq
ATGTTTGAATTTCTATTAAGGTG
3' ss Score
6.83
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CAAGTATTTCCATGGTTCAAGCTGCTTCTGCGGGCCCCCCGTCCCTCAGAAAGGACTCGACTCCCGTTATTGCTAATGTGGTCTCTCTAGCAAGTGCTCCTGCTGCACAGCCCACAGCAAACGCTAACAGCGTCTTACAAG
Seq A exon
GTGCAGTTCCAACAGTAACAGCGAAAATCATCGGGGAT
Seq C2 exon
GCAAGTACTCAAACAGATGCCCTGAAACTTCCACCTTCCCAGCCTCCAAGGCTTTTGAAGAACAAAGCTTTATTGTGCAAACCCATCACACAGACTAAAGCCACCTCATGCAAACCACATACTCAAAACAAAGAATGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'36-32,'36-30,37-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCGACTCCCGTTATTGC
R:
GGAAGGTGGAAGTTTCAGGGC
Band lengths:
128-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]