BtaEX6019001 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110964076-110965781:-
Coord C1 exon
chr3:110965641-110965781
Coord A exon
chr3:110965269-110965306
Coord C2 exon
chr3:110964076-110964220
Length
38 bp
Sequences
Splice sites
3' ss Seq
TATATTTTTATTTATATCAGGTG
3' ss Score
7.66
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CAAGTATTTCCATGGTGCCAGCTGCTTCAGCAGGGCCGCCATCTCTAAGAAAAGATTCAACTCCAGTTATAGCTAATGTGGTATCATTAGCAAGTGCTCCTGCTGCTCAGCCCACAGTGAATTCTAACAGTGTCTTACAAG
Seq A exon
GTGCAGTTCCAACAGTAACAGCAAAAATCATTGGGGAT
Seq C2 exon
GCAAGTACACAAACAGATGTCCTAAAACTGCCACCTTCCCAGCCTCCAAGACTTCTGAAGAATAAAGCTTTATTGTGCAAACCCATCACACAGACCAAGGCCACCTCTTGCAAACCACATACACAAAACAAAGAATGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAGTGAATTCTAACAGTG
R:
GGTCTGTGTGATGGGTTTGCA
Band lengths:
128-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]