MmuEX6096142 @ mm10
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126898296-126900748:-
Coord C1 exon
chr4:126900605-126900748
Coord A exon
chr4:126899932-126899969
Coord C2 exon
chr4:126898296-126898440
Length
38 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCAATTTCTATTAAGGTG
3' ss Score
7.61
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TAGCAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGGGCCTCCGTCCCTCAGAAAAGATTCAACTCCAGTCATTGCTAATGTGGTATCTTTAGCAAGTGCTCCTGCTGCCCAGCCCACAGCAAACACCAACAGCGTCTTACAAG
Seq A exon
GTGCAGTTCCAACAGTTACAGCGAAAATCATTGGGGAT
Seq C2 exon
GCAAGTACTCAAACAGATGCCCTGAAACTTCCACCTTCCCAACCTCCAAGGCTTTTGAAGAACAAAGCTTTATTGTGCAAACCCATTACACAGACTAAAGCCACGTCATGTAAACCACATACTCAAAACAAAGAATGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'41-38,'41-36,42-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.000 C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGTCATTGCTAATGTGGT
R:
GGAAGGTGGAAGTTTCAGGGC
Band lengths:
121-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types