HsaEX6029923 @ hg19
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:26253]
Coordinates
chr1:35577373-35578816:+
Coord C1 exon
chr1:35577373-35577513
Coord A exon
chr1:35577688-35577731
Coord C2 exon
chr1:35578578-35578816
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTTATGCTCTATTTTAACAGATA
3' ss Score
9.01
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TAAGTGTTGTTTCTGTGGTGCATGATACTTCAACAGAGCTTCTTTCTCCAAAGAAAGATACGACTCCAGTTATAAGCAATATAGTGTCATTGGCAGACACCGATGTTGCCTTGCCCATCATGAACACTGATGTCTTACAAG
Seq A exon
ATACAGTTTCTTCAGTAACAGCAACAGCAGATGTCATTGTGGAT
Seq C2 exon
CTTTCTAAGAGTTCACCTAGTGAACCCAGTAATGCTGTTGCTAGTAGTAGTACGGAACAGCCAAGCGTTTCACCATCTTCATCAGTATTCAGTCAGCATGCAATTGGTTCCAGTACAGAAGTACAAAAAGACAATATGAAATCTATGAAAATAAGTGATGAACTATGTCACCCAAAATGTACATCCAAAGTACAAAAAGTTAAAGGTAAATCACGAAGTATTAAAAAATCTTGTTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
80%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.027 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF142911=DUF4371=WD(100=31.0),PF056999=Dimer_Tnp_hAT=WD(100=11.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCATTGGCAGACACCGAT
R:
AAGATGGTGAAACGCTTGGCT
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)