Special

MmuEX6096155 @ mm9

Exon Skipping

Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:126724338-126728116:-
Coord C1 exon
chr4:126727988-126728116
Coord A exon
chr4:126727808-126727845
Coord C2 exon
chr4:126724338-126727150
Length
38 bp
Sequences
Splice sites
3' ss Seq
GCTTTCATTTGTCTCGACAGGTA
3' ss Score
11.43
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTAATGTATCCATGGTGCACAGTTCTTCAAAAGAGAATCTCTGTCCAAAGAAATATCCAGTTATAAGCAATATAATGTCGTTAGTAAATAATCATGTTGACCTGGTCGTGAACACTGATCTCTTACAAG
Seq A exon
GTACACTTTCTTCTCTACCGACAGATGTCATCATGAGC
Seq C2 exon
AACTCAGCCAGTGAGTCCAGCAGTGGTGTTGGTAATAGTGCGGACCAGCCAGGCCTCCTCCCACCTTGCTCGGTGCTCTGTGAGGACACAGCTGCTCCCGGTGAGGGAGTAGAGAACAACAGTGAGAAATCCATGGAAGGAAATGATAGGCTGTGTCTCTCAAAGTCCACATTAACAGAACAGAACATTAAGACAGAGCCTCCGGGAGAGCCCTGGAGCCCAGCTCTCCAGCATCTGCATCCCAGCCCTGCAGACAATATCGCATTCTGCTATTCTTGCTACTTGTTCTTCCAGAAAAAATTTAGCTGTCGGAGAGAAGCTTTTGCAACCCAAGGAACTGCTGACTGGGAGAAAATGCTGGGAAATTTCAGAAAGCATGAAGAAAGTGACGTGCACTTAAAGTCACTGCAATTTTGGAGGCAATACCAGTTTCTCGATGCTATTCCGTGTGACAATTCATCTGTTTATTCAAAACAGATTGAAGGAAATAAAAAGTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.030 A=0.154 C2=0.062
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF142911=DUF4371=WD(100=31.1),PF056999=Dimer_Tnp_hAT=WD(100=11.9)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000050669





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000101705, ENSMUSP00000101708
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:35112093-35112130 
HsaEX6029923
(ZMYM1)
Human
(hg19)
chr1:35577688-35577731 
HIGH PSI
HsaEX6029923
(ZMYM1)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr3:111183060-111183097 
HIGH PSI
BtaEX0041018
(ZMYM1)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr23:4679958-4679995 
HIGH PSI
GgaEX6025132
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTTGACCTGGTCGTGAACAC

				
R: 
TGTCCTCACAGAGCACCGAG

				
Band lengths: 
123-161

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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