HsaEX6029923 @ hg38
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35111772-35113215:+
Coord C1 exon
chr1:35111772-35111912
Coord A exon
chr1:35112093-35112130
Coord C2 exon
chr1:35112977-35113215
Length
38 bp
Sequences
Splice sites
3' ss Seq
CTCTATTTTAACAGATACAGTTT
3' ss Score
-3.3
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TAAGTGTTGTTTCTGTGGTGCATGATACTTCAACAGAGCTTCTTTCTCCAAAGAAAGATACGACTCCAGTTATAAGCAATATAGTGTCATTGGCAGACACCGATGTTGCCTTGCCCATCATGAACACTGATGTCTTACAAG
Seq A exon
TTTCTTCAGTAACAGCAACAGCAGATGTCATTGTGGAT
Seq C2 exon
CTTTCTAAGAGTTCACCTAGTGAACCCAGTAATGCTGTTGCTAGTAGTAGTACGGAACAGCCAAGCGTTTCACCATCTTCATCAGTATTCAGTCAGCATGCAATTGGTTCCAGTACAGAAGTACAAAAAGACAATATGAAATCTATGAAAATAAGTGATGAACTATGTCACCCAAAATGTACATCCAAAGTACAAAAAGTTAAAGGTAAATCACGAAGTATTAAAAAATCTTGTTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056-'54-54,'54-53,55-54
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.033 C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF142911=DUF4371=WD(100=31.0),PF056999=Dimer_Tnp_hAT=WD(100=11.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTTGCCCATCATGAACA
R:
AAGATGGTGAAACGCTTGGCT
Band lengths:
115-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains