BtaEX0041018 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111182344-111183410:-
Coord C1 exon
chr3:111183264-111183410
Coord A exon
chr3:111183060-111183097
Coord C2 exon
chr3:111182344-111182449
Length
38 bp
Sequences
Splice sites
3' ss Seq
TTGAATTTATGCTTTAACAGGTA
3' ss Score
8.37
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TTTTATCAATAAATGTTTCAGTGGTACGTGATGCTTCAACGAATCTCCCTTCTCCAAAGAAAGATGCAACTCCAGTTATAAGCAATATAGTGTCATTGGCAGATACTCATGATGCCCTGCCCATTGTGAACTCTGATGTATTACAAG
Seq A exon
GTACAGTTTCTTCAGTAACAGCAAATGTCATTGAGGAT
Seq C2 exon
ATTTCACCCAGTGAATCAAGTAATAGTGTGCAGCAGCCAAGCCTTTCACCACCGTCATCTGTAGTCAGTCAGCATACGGTTGCCTTAAATACAGAAGAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.000 C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCCCATTGTGAACTCTG
R:
AAGGCAACCGTATGCTGACTG
Band lengths:
119-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development