RnoEX0102000 @ rn6
Exon Skipping
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145105997-145110117:-
Coord C1 exon
chr5:145110080-145110117
Coord A exon
chr5:145109669-145109805
Coord C2 exon
chr5:145105997-145108878
Length
137 bp
Sequences
Splice sites
3' ss Seq
AACACTAGCTGCTCTTTCAGAGG
3' ss Score
3.1
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTACACTTTCTTCTGTACCTACAAATGTCATTGTGAAC
Seq A exon
AGGACCTGGGTTCAGTCCCCAGCCACCCATGAGACAGCCCACAACTGTCTGTGACTCCAGTTTCGGGGGATCCGAGAAGCCTTCTGTTGGCCCCTGCAGGCAGTGGACACACTAGTAGTGCACAGATATACATGCAG
Seq C2 exon
AGCTCAGCCAGTGAGTCCAGCAGTGGTGTTGGAAATAGTGTGGACCAGCCAAGCCTCCCCCCGCCTTCCTCTGTGCTCGGTGAGGACAAAGCTGCTCCCAGTGAGGAGGTCCAAAACAACAGTGAGACAAACCAGGATCCTACATATAGCATGACATCCGTGAAAGGAAATGATCAGCCATGTTTCTCAAAGTCTACATCCACAGAACAGAAGATTAAGAGTGAGCCACAGCCTGCTGGAGAGCTGTGGAGCCCAGGTTCCCAGCATCTGCGTCCCAGTACTGCCAATGAGATCGCTTTCTGCTATTCTTGCTACTTGTTCTACCAGAAAAAAGTCAGCTGTCGGAGAGAAGCTTTTGCAACCAAAGGAGCTGCTGCTGACTGGGAGAGAATGCTGGAAAATTTCAGACGGCATGAAGAAAGCGAAGGGCACTTAAAGTCCCTGCGATTTTGGAGGCAATGCCAGTTTCTCGATGCCGTTCCACATAACGATTCATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855-'15-12,'15-11,16-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=0.000 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF142911=DUF4371=WD(100=30.6),PF056999=Dimer_Tnp_hAT=WD(100=11.7)
Main Inclusion Isoform:
ENSRNOT00000064015fB17062
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCTACAAATGTCATTGTGAAC
R:
GGCTGTGGCTCACTCTTAATCT
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]