MmuINT0180457 @ mm9
Intron Retention
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:126727808-126728116:-
Coord C1 exon
chr4:126727988-126728116
Coord A exon
chr4:126727846-126727987
Coord C2 exon
chr4:126727808-126727845
Length
142 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
GCTTTCATTTGTCTCGACAGGTA
3' ss Score
11.43
Exon sequences
Seq C1 exon
TTAATGTATCCATGGTGCACAGTTCTTCAAAAGAGAATCTCTGTCCAAAGAAATATCCAGTTATAAGCAATATAATGTCGTTAGTAAATAATCATGTTGACCTGGTCGTGAACACTGATCTCTTACAAG
Seq A exon
GTAAACAGACGTTTGACATAAACAGTGTTTTGTCATATTGTTGAATCTGTCTGTCTGTTTGCTGATATGAAATAAGCTTCATGAGCTTATGGTGCTATTAAAGTGTAAAATCTCAAATATGTGCTTTCATTTGTCTCGACAG
Seq C2 exon
GTACACTTTCTTCTCTACCGACAGATGTCATCATGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872-Zmym1:NM_026670:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCCATGGTGCACAGTTCT
R:
GACATCTGTCGGTAGAGAAGAAAGT
Band lengths:
154-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: