RnoINT0169109 @ rn6
Intron Retention
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145110080-145110388:-
Coord C1 exon
chr5:145110260-145110388
Coord A exon
chr5:145110118-145110259
Coord C2 exon
chr5:145110080-145110117
Length
142 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
GCTTTAATTTGTTTCAACAGGTA
3' ss Score
10.67
Exon sequences
Seq C1 exon
TTAATGTTTCCATGGTGCACAGTGCTTCAAAAGAGAATGTCTGTCCTAAGAAATACCCAGTCATAAGCAGTATAATGTCATTAGTAAACAATCGTGCTGACCTGGTCGTGAATACTGATCTCTTACAAG
Seq A exon
GTAAACAGACATTTGATATAAACAGTGTTTTGCCATATTGTTGAATCTGTCTGTCTGTTTCCTGATATGAAATAAGCTGTGTGAGCTTATGGTACTGTTAAAGTATAAAATCTTGAATATGTGCTTTAATTTGTTTCAACAG
Seq C2 exon
GTACACTTTCTTCTGTACCTACAAATGTCATTGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855:ENSRNOT00000064015:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCATGGTGCACAGTGCT
R:
GTTCACAATGACATTTGTAGGTACA
Band lengths:
162-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]