HsaEX0057756 @ hg38
Exon Skipping
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr2:72942036-72961248:-
Coord C1 exon
chr2:72961131-72961248
Coord A exon
chr2:72956980-72957103
Coord C2 exon
chr2:72942036-72945099
Length
124 bp
Sequences
Splice sites
3' ss Seq
GGGGATGTGGTCCACTATAGGAG
3' ss Score
4.19
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GACGGCTCTCCTGCAGGCACGCCCCCGGCTGCTCCTCCCTGTGCAAAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTCTTCCCGCAAATGTCAGAG
Seq A exon
GAGGAAGAAAAACCATCAAGAAGGGGAAGAAGCAGCCAAGGGCACAGGGAGAACCCAGATGGAGTAACTTCATGGAAGCTGAGGACTTGGGCGATTCAAAGAGGAGGGGCTGTCTCCAGAGTGG
Seq C2 exon
ATTGAAACATCCCAATTAGAGCCGGAGATAGCCCAGGCCACGAGCAGCCGGACAGTGGTGTACAACAAGGGGTTGTGAGTGTGGTCAGCGGCCTGGGGACGGAGCACTGTGCAGCCGGGGAGCTGAGGGGCAGGGCCGTAGACTCACGGCTGCACCTGCAGGGAGCAGCACGCCAACCCCAGCAGTCCTGGGCCCCCTGGGAGAGTGCTCAACCTACAGTGGAGGGAGACTGACCCATTCACATTTTAACATAGGCAAGAGGAGTTCTAACACATTTCGTACAAAAAAATAATCAAGTGCATTTCTGGGCCTTATGTGGGGTTGTCAAAACTCCACTCAGCACAATTATGTGTGAAGCTGAAAAATTGTAGAGTGCCCATGGGGTAGAAGTAGAATCCTTTTATACTTTGGTTCCTTTTTTATTTTTATTTTTTATCAGAATCAAATCTGAGCCTTAGTTTCAGCTGACCAGAAGTGGCAGGAGGACAGGTGGAGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040_MULTIEX1-9/12=8-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.476 C2=0.127
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(12.6=100)
A:
NA
C2:
PF0382012=Mtc=PD(7.8=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCTCTTCCCGCAAATG
R:
TAGGTTGAGCACTCTCCCAGG
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development